Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKKELFDTVINLEEQIGSLYRQLGDLKQHIGEMIEENHHLQLENKHLRKRLDDTTQQIEKFKADKKESKTQKTEQTDIGEGYDNLARLYQEGFHICNVHYGSVRKEDCLFCLSFLNKK
1KD8 Chain:B ((1-33))
----------------------KVKQLKAKVEELKSKLWHLKNKVARLKKKNAEC----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2219 for 122 contacts (18.2/contact) +
2D Compatibility (PS) -3732 + (NN) -3957 + (LL) 5956
1D Compatibility (HY) -1200 + (ID) 350
Total energy: -1064.0 ( -8.72 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_1KD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KD8-query.scw
PDB file :
Tito_Scwrl_1KD8.pdb
: