Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFDTHAHLNAEQYDTDLEEVIERAKAEKVERIVVVGFDRPTITRAMEMIEEYDFIYAAIGWHPVDAIDMTEEDLAWIKELSAHEKVVAIGEMGLDYHWDKSPKDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAEVARECMKMNFYLSFGGPVTFK-NAKKPKEVVKEIPNDRLLIETDCPFLTPHPFRG----KRNEPSYVKYVAEQIAELKEMTFEEIASITTENAKRLFRIN
1XWY Chain:A ((5-263))
-MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGIA
General information:
TITO was launched using:
RESULT:
Template:
1XWY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153150 for 2242 contacts (-68.3/contact) +
2D Compatibility (PS) -27651 + (NN) -14012 + (LL) 208
1D Compatibility (HY) -15600 + (ID) 3900
Total energy: -214105.0 ( -95.50 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_1XWY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XWY-query.scw
PDB file :
Tito_Scwrl_1XWY.pdb
: