Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEK-DGKIGLSIKKAKDRPQARPR-----------------NDFRPKESFEQKMNKFLKDSEDRLSSLKRNTESKRGGRGARRG
4NNG Chain:A ((291-411))
--HAIGQIVAGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEEFDPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGFEKQR-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4NNG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33881 for 653 contacts (-51.9/contact) +
2D Compatibility (PS) -10490 + (NN) -765 + (LL) 736
1D Compatibility (HY) -6800 + (ID) 1650
Total energy: -52850.0 ( -80.93 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_4NNG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NNG-query.scw
PDB file :
Tito_Scwrl_4NNG.pdb
: