Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGDERQHSVYKGLKAVKQ-----EKIVLVHDGARPFIKHEQIDELI-AEAEQTGAAILAVPVKDTIKRVQ--DLQVSETIERSSLWAVQTPQAFRLSLLMKAHAEAERKGFLGTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDLTSAEAIMESESGNKHV
4ZDQ Chain:D ((12-234))
----ALIPCA---------LPKQYRTLAGRALLHYTLAAFDACSEFAQTLVVISPDDAHFDARRFAGLRFAVR---RCGGASRQASVMNGLIQLAEFGATDADWVLVHDAARPGITPALIRTLIGALKDDPVGGIVALPVADTLKRVPAGGDAIERTESRNGLWQAQTPQMFRIGMLRDAIQRAQLEGRDLTDEASAIE-WAGHTPRVVQGSLRNFKVTYPEDFDLAEAIL---------
General information:
TITO was launched using:
RESULT:
Template:
4ZDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110486 for 1628 contacts (-67.9/contact) +
2D Compatibility (PS) -22462 + (NN) -8531 + (LL) 1184
1D Compatibility (HY) -13200 + (ID) 3850
Total energy: -157345.0 ( -96.65 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_4ZDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZDQ-query.scw
PDB file :
Tito_Scwrl_4ZDQ.pdb
: