Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEFDTIKDSKQLNGLALAYIGDAIFEVYVRHHLLKQ-GFTKPNDLHKKSSRIVSAKSQAEILFFLQNQSFFTEEEEAVLKRGRNAKSGTTPKNTDVQTYRYSTAFEALLGYLFLEKKEERLSQLVAEAIQFGTSGRKTNESAT
3O2R Chain:A ((57-165))
-----------SYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGD--------FILMSVAEENNGGKEKPS----ILSDALEAIIGAIHLEAGFEFAKTIALRLIEK------------
General information:
TITO was launched using:
RESULT:
Template:
3O2R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31828 for 745 contacts (-42.7/contact) +
2D Compatibility (PS) -11681 + (NN) -4977 + (LL) 2244
1D Compatibility (HY) -6400 + (ID) 1250
Total energy: -53892.0 ( -72.34 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_3O2R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O2R-query.scw
PDB file :
Tito_Scwrl_3O2R.pdb
: