Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKKITLACKTCGNRNYTTMKSSASAAERLEV----KKYCSTCNSHTAHLETK
1YSH Chain:D ((25-50))
-------------------------QIKKMEVSQHSKYFCEFCGKFAVKRK--
General information:
TITO was launched using:
RESULT:
Template:
1YSH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 304 for 73 contacts (4.2/contact) +
2D Compatibility (PS) -2417 + (NN) -1226 + (LL) 1652
1D Compatibility (HY) -1600 + (ID) 250
Total energy: -3537.0 ( -48.45 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_1YSH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YSH-query.scw
PDB file :
Tito_Scwrl_1YSH.pdb
: