Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVVKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTADQAGLIIPVEISVYEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAADVEAAMRMVEGTARSMGIVIED
3CJT Chain:F ((2-136))
--KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRKAAGLEKG-HKPGREKVGR---EQVLEIAKQKMP------LEAAARMIAGSARSMGV----
General information:
TITO was launched using:
RESULT:
Template:
3CJT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63089 for 816 contacts (-77.3/contact) +
2D Compatibility (PS) -13664 + (NN) -6344 + (LL) 1336
1D Compatibility (HY) -12800 + (ID) 4150
Total energy: -98711.0 ( -120.97 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_3CJT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CJT-query.scw
PDB file :
Tito_Scwrl_3CJT.pdb
: