Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTINQLIRKGRVSKVENSKSPALNKGYNSFKKEHTNVSSPQKRGVCTRVGTMTPKKPNSALRKYARVRLTNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRAQGRSKYGTKKPKAK
4B3R Chain:L ((2-119))
-PTINQLVRKGREKVRKKSKVPALK-------------GAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGT------
General information:
TITO was launched using:
RESULT:
Template:
4B3R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22356 for 775 contacts (-28.8/contact) +
2D Compatibility (PS) -12873 + (NN) -6588 + (LL) 916
1D Compatibility (HY) -10800 + (ID) 4450
Total energy: -56151.0 ( -72.45 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_4B3R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B3R-query.scw
PDB file :
Tito_Scwrl_4B3R.pdb
: