Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLHELKPS-EGSRKTRNRVGRGIGSGNGKTAGKGHKGQNARSGGGVRPGFEGGQMPLFQRLPKRGF-TNI-NRKEYAVVNLDKLNGF-AE-----GTEVTPELLLETGVIS--KL--NAGVKILGNG--KLEKKLTVKANKFSASAKEAVEAAGGTAEVI
3J7Y Chain:M ((22-177))
VSLANLKPNPG-SKK-PERRPRG--RRRGRKCGRGHKGERQRGTR-PRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQLVNGRGVTIQPLKRDYGVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTA
General information:
TITO was launched using:
RESULT:
Template:
3J7Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14412 for 752 contacts (-19.2/contact) +
2D Compatibility (PS) -15331 + (NN) -4622 + (LL) -260
1D Compatibility (HY) -6000 + (ID) 2250
Total energy: -42875.0 ( -57.01 by residue)
QMean score : 0.733
(partial model without unconserved sides chains):
PDB file :
Tito_3J7Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J7Y-query.scw
PDB file :
Tito_Scwrl_3J7Y.pdb
: