Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METNKPTLYWSLLMFKDWNFYIASTLKGLVFVGSQNKPIEELFEWARKRFPGSLLVEDDDKLEPYAVEITQYLEGKRKNFTVPVEYAGTQFQLAVWNALCEIPYGQTKSYSDIANDINKPAAVRAVGAAIGANPVLITVPCHRVIGKNGSLTGYRGGFEMKTLLLDLEKRASSEMDVPH
4HDV Chain:A ((5-67))
-----------------------------------------------------------------------------------------EFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTIS---------------------------
General information:
TITO was launched using:
RESULT:
Template:
4HDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38196 for 409 contacts (-93.4/contact) +
2D Compatibility (PS) -6540 + (NN) -2651 + (LL) 7792
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -45595.0 ( -111.48 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_4HDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HDV-query.scw
PDB file :
Tito_Scwrl_4HDV.pdb
: