Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSNGDKLSLSVQNLANTNEITIVQAIGELKKSGK-DAIPVLVEALKEE-GSLCNIAAAVLGEFGEDASEAAEELSCLLKSHAEDTRMAAAISLMRIGKP-SLPFVIKIAQESEGQSCFWASWCIAWIDPSCIEPKMYKCLKYEHEHPSGIVAPFAAEEALGKLIAFQLKDKED
3LTJ Chain:A ((20-172))
------KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER--AVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE----RAVEPLIKALKDEDGWVRQSAA-DALGEIGG--------
General information:
TITO was launched using:
RESULT:
Template:
3LTJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108495 for 1295 contacts (-83.8/contact) +
2D Compatibility (PS) -16023 + (NN) -10850 + (LL) 684
1D Compatibility (HY) -3600 + (ID) 2050
Total energy: -140334.0 ( -108.37 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_3LTJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LTJ-query.scw
PDB file :
Tito_Scwrl_3LTJ.pdb
: