Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDVTLGYLRESLSNHLENEVCQRICKKMLAKRYANEEEFVKDLDDNEMSFLNHVLEKEIKYAQNEQDQKRAKELNEVYELLL
2RDP Chain:A ((103-143))
-----------------LEKGERIIEEVIEKRQRDLANVLESFSDEEIVVFERCLRKL------------------------
General information:
TITO was launched using:
RESULT:
Template:
2RDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1338 for 162 contacts (8.3/contact) +
2D Compatibility (PS) -4513 + (NN) -4145 + (LL) 3620
1D Compatibility (HY) -3600 + (ID) 450
Total energy: -7750.0 ( -47.84 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_2RDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RDP-query.scw
PDB file :
Tito_Scwrl_2RDP.pdb
: