Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLMNEFEKACETLRKFMAYMLEK-DMKSWTELWDENAVFEFPYAPEGSPKRIEGKAAIYDYIKDYPKQIHLSSFTAPTVYRSADSNTVIAEFQCDGHVIETGLPYRQSYISVIETRDGRIVRYRDYWNPLVVKEAFGGSFLQTEESGK
4J8T Chain:D ((1-128))--MNAKEIVVHALR-----LLENGDARGWCDLFHPEGVLEYPYPPPGYKTRFEGRETIWAHMRLFPEYMTIR-FTDVQFYETADPDLAIGEFHGDGVH--SGGKLAADYISVLRTRDGQILLYRLFFNPLRVLEPL------------


General information:
TITO was launched using:
RESULT:

Template: 4J8T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 548 -60401 -110.22 -483.21
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain D : 0.76

3D Compatibility (PKB) : -110.22
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.592

(partial model without unconserved sides chains):
PDB file : Tito_4J8T.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4J8T-query.scw
PDB file : Tito_Scwrl_4J8T.pdb: