Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMMMKYEAVIIGGGPVGFMLASELAIAGVGTCVIERLEKPVPHSKALTLHPRTLELLEMRGILERFVSKGSKIPTGHFSMLDTRLDFSGLDTSCPYTLLLPQSKTEKLLEDHARSLGTEVFRGAEALAVTQNGEAVQTIFKDRDGSVRTITSKFAVGADGAGSTVRKQAKIEFPGTDSTVTAALGDVVLLSPPPSGVLSLCTKEGGVMIVPLSPDRYRVVVISPYRTQTPKDVPVTEEELKADLLRICGTDFGLTDPSWMSRFGNAARQAKRYRDGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGSAPSWLLDSYHDERHPAAEGLLRNTEAQTKLIDFTQAGLHLRSMMSELLAFPDVNRYVAGQISALDVRYEADRTMPPNRLNGARLPDMKLILSDGNSERLYSFLQNGTFVLLSLRQEA---DDHIEVKGLRTVTASLAEPNEKLRNVHTILIRPDGHVAWAVDASAPDCSEVIQKGISRWFSVTSRV
4X4J Chain:B ((21-507))--MDAPVVIAGAGPAGLMLAGELRLAGIGVVVLERLPARTGESRGLGFTARTMEVFDQRGLLRRF-GEVQTSDQGHFGGIP--VDFGLLDGAHQAAKTIPQSATEAVLEAWAGELGADIRRGHELTGVRDDGDGVAVTVRGPAGE-HVLRAGWLVGCDGGRSAVRKAVGFDFPGTAATREMFLADLRGVELEPR-----SLPGGMVMVGPLPGGVTRIIVCERDAPPRRRTGPPPFHEVADAWKRITGIDISAAEPVWLSAFGDATRQVTEYRRGRVLLAGDAAHVHLPAGGQGMNAGIQDAVNLGWKLAAVVRGTARADLLDTYHGERHPVGVRLLMNTRAQGLLFLNGAEMQPLRDVLAELTGYPDVARHLAAMVSGLEIAYDVGGGSHP--WLGRRLPRLELD-R---PSSTAELLRPARGLLLDFAGNAALRDRAAPWAGRIDVVTARPAAGRVPGATTAVLVRPDGHVAWA----APGTHADLPMALERWFGPAPR-


General information:
TITO was launched using:
RESULT:

Template: 4X4J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 2811 -244958 -87.14 -513.54
target 2D structure prediction score : 0.52
Monomeric hydrophicity matching model chain B : 0.78

3D Compatibility (PKB) : -87.14
2D Compatibility (Sec. Struct. Predict.) : 0.52
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.498

(partial model without unconserved sides chains):
PDB file : Tito_4X4J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4X4J-query.scw
PDB file : Tito_Scwrl_4X4J.pdb: