Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKIMSAFVGMVLLTIFCFSPQASAAYDDLHEGYATYTGSGYSGGAFLLDPIPSDMEITAINPADLNYGGVKAALAGSYLEVEGPKGKTTVYVTDLYPEGARGALDLSPNAFRKIGNMKDGKINIKWRVVKAPITGNFTYRIKEGSSRWWAAIQVRNHKYPVMKMEYEKDGKWINMEKMDYNHFVSTN-LGTGSLKVRMTDIRGKVVKDTIPKLPESGTSKAYTVPGHVQFPE
4JCW Chain:B ((10-179))---------------------------------YSLGQGNTIANGNCSMPAVPADRMYVAVSSPE--YSG--AAACGTFLDVTGPKGTVRVQVADQCHGCEVGHLDLSEEAFRALGDFNAGIIPISYVTVRDPAGPTVAIRVKEGSSRWWAGLQVLNAGNRIDRVEIQAGRQWLPLTRTDYGYWVTPSPIQDGPLTVKVTDQYGRAV--------------------------


General information:
TITO was launched using:
RESULT:

Template: 4JCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 823 -57894 -70.34 -342.57
target 2D structure prediction score : 0.79
Monomeric hydrophicity matching model chain B : 0.70

3D Compatibility (PKB) : -70.34
2D Compatibility (Sec. Struct. Predict.) : 0.79
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.587

(partial model without unconserved sides chains):
PDB file : Tito_4JCW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4JCW-query.scw
PDB file : Tito_Scwrl_4JCW.pdb: