Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKAVTYQGIKNVVVKDVPDPKIEKSDD------MIIKVTSTAICGSDLHLIHGFIPNMQEDYVIGHEPMGIVEEVGSGVTKLKKGDRVIIPFNIACGECFFCKNQLESQCDQSNDNGEMGAYFGYSGQTGGYPGGQAEYLRVPFANFTHFKIP--ESCEEPDEKLSVIADAMTTGFWSVDNAGVKKGDTVIVLGCGPVGLFAQKFCWLKGAKRVIAVDYVNYRLQHAKRTNKVEIVNFED----HENTGNYLKEITKGGADVVIDAVGMDGK-----MSDLEFLASGL-KLHGGTMSALVIASQAV---RKGGTIQITGVYGGRYNGFPLGDIMQRNVNIRSGQAPVIHYMPYMFELVSTGKIDPGDVVS-HVLPLSEAKHGYDIFDSKMDDCIKVVLKP
4JLW Chain:C ((5-392))-RGVVYLGPGKVEVQNIPYPKMQDPQGRQIDHGVILRVVSTNICGSDQHMVRGRT-TAPEGLVLGHEITGEVVEIGRGVETMKIGDLVSVPFNVACGHCRTCKEQHTGVCLTVNPARAGGAY-GYV-DMGGWVGGQAEYVLVPYADFNLLKLPNREAAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASARLLGAAVVIVGDVNPTRLAHAKKQG-FEIADLSKDTPLHEQIAALLGEPE---VDCAVDAVGFEARGHGHSGSQQEAPATVLNSLMGITRVAGKIGIPGLYVTEDPGAVDAAAKHGALSIRFGLG--WAKSHSFHTGQTPVMKYNRQLMQAIMWDRIKIADIVGVEVITLDDAPKGYGEFDAGVPK--KFVIDP


General information:
TITO was launched using:
RESULT:

Template: 4JLW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 2285 -35232 -15.42 -96.26
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain C : 0.77

3D Compatibility (PKB) : -15.42
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.445

(partial model without unconserved sides chains):
PDB file : Tito_4JLW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4JLW-query.scw
PDB file : Tito_Scwrl_4JLW.pdb: