Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence------------MNGRTLFFRRLFDYYKYQFKVLHAVIDWTV--ALYIVLPAIAFVIYQYIDLMNGRGLLYEWSEVAE--WRWLYAVCVLIMFTGS-----------IRTFLMEAD----------------------------KVFLLQKKEIIYQLKRYALLY--------------SFLATLAKWLLLFFIVLPLIS----HSVLITF------------AESTALLCY------LFGLHIFFLSLKQDR----------IRKPRSISRWIGDT---LVRAILFAGSAILIVFTERHLLALFGILFLFFSV---IRSLK----KTASFTAFEAEVTEEKKSRLALAGLVMMMSQEAG-----------MPKVKDRMRRKPLLYR-NSKRIFKRRTICT-------------GYKELFFKVMLRNGEYARQMYMLLSAFTVLIFVSPIWLKVIALLVYT------GVCRYILTLIFDKVMDAPFLI----GTDKESDEYYRARKSCINILHYAFAACCFLAAAVSLLFT-----------
1JVN Chain:A ((1-555))GSHMPVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGN-YGHFVDNLFNRGFEKPIREYIESGKPIMGIVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPSENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKNNIFATQFHPEKSGKAGLNVIENFLKQQSPPIPNYSAEEKELLMNDYSNYGLTRRIIACLDVRTNDQGDLVVTKGDLGKPVQLAQKYYQQGADEVTFLNITDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLG----VWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAV-KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLEHGLKVRMDEE


General information:
TITO was launched using:
RESULT:

Template: 1JVN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2044 -137227 -67.14 -362.08
target 2D structure prediction score : 0.37
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : -67.14
2D Compatibility (Sec. Struct. Predict.) : 0.37
1D Compatibility (Hydrophobicity) : 0.64
QMean score : ?

(partial model without unconserved sides chains):
PDB file : Tito_1JVN.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1JVN-query.scw
PDB file : Tito_Scwrl_1JVN.pdb: