Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAE---IVSPGSVLVSGRLLSDITRALPNKPVDVHVE-GNRVALTCGNARFSLPTMPVEDYPTLPTLP-EETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILG-ETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIG-GSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADR--GAQVRMEFADGSVRLSA-GADDVGRAEEDLVV-DYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG |
| 2AVT Chain:A ((1-377)) | -----------MIQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPV-GLLITSPGAILLEASFFINIISSLPDISINVKEIEQHQVVLTSGKSEITLKGKDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNT--SADFMVVLPSKSLREFSAVFTDDIETVEVFFS-------PSQILFRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQNHISAHVNSPEV-GKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETVKIHFLSPVRPFTLTPGDE-----------------EESFIQLITPVRT-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2AVT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -250993 for 2865 contacts (-87.6/contact) +
2D Compatibility (PS) -39587 + (NN) -17080 + (LL) 172
1D Compatibility (HY) -22000 + (ID) 4650
Total energy: -334138.0 ( -116.63 by residue)
QMean score : 0.570
|
|
|