Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTRLQAPVAVTPPLPTRRNAELLLLCFAAVITFAALLVVQANQDQGVPWDLTSYGLAFLTLFGSAHLAIRRFAPYTDPLLLPVVALLNGLGLVMIHRLDLVDNEIGEHRHPSANQQMLWTLVGVAAFALVVTFLKDHRQLARYGYICGLAGLVFLAVPALLPAALSEQNGAKIWIRLPGFSIQPAEFSKILLLIFFSAVLVAKRGLFTSAGKHLLGMTLPRPRDLAPLLAAWVISVGVMVFEKDLGASLLLYTSFLVVVYLATQRFSWVVIGLTLFAAGTLVAYFIFEHVRLRVQTWLDPFADPDGTGYQIVQSLFSFATGGI-FGTGLGNGQPDTVPAASTDFIIAAFGEELGLVGLTAILMLYTIVIIRGLRTAIATRDSFGKLLAAGLSSTLAIQLFIVVGGVTRLIPLTGLTTPWMSYGGSSLLANYILLAILARISHGARRPLRTRPRNK-SPITAAGTEVIERV |
2E8X Chain:B ((4-340)) | --NKMEAKIDELINNDPVW--------SSQNESLISKPYNHILLKPG------------KNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDIEDNAPLRRGQTTSHLIFG-------------------------------------VPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSH----------------------------------------------GHSLVPFINLLGIIYQIRDDYLNLKDFQMSFAEDITEGKL-------------------------------SFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTN------------------SLAYTKNFINQLVNMIKNDNENKYLPELLYIIDHLSEL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2E8X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -147763 for 2390 contacts (-61.8/contact) +
2D Compatibility (PS) -32653 + (NN) -8905 + (LL) 14708
1D Compatibility (HY) -2000 + (ID) 1700
Total energy: -178313.0 ( -74.61 by residue)
QMean score : 0.258
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