Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQDSIFNLLTEEQLRGRNTLKWNY-------FGPDVVPLWLAEMDFPTAPAVLDGVRACVDNEEFGYPPLGE-DSLPRATADWCRQRYGWCPRPDWVRVVPDVLKGMEVVVEFLTRPESPVALPVPAYMPFFDVLHVTGRQRVEVPMVQQDSGRYLLDLDALQAAFV-RGAGSVIICNPNNPLGTAFTEAELRAIVDIAARHGARVIADEIWAPVVYG-SRHVAAASVSEAAAEVVVTLVSASKGWNLPGLMCAQVILSNRRDAHDWDRINMLHR-MGASTVGIRANIAAYHHGESWLDELLPYLRANRDHLARALPELAPGVEVNAPDGTYLSWVDFRALA-LPSEPAEYLLSKAKVALSPGIPFGAAVGSGFARLNFATTRAILDRAIEAIAAALRDIID |
1C7N Chain:A ((1-394)) | ---MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTG--PTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLE-KDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGD-GGIGFERINLAAPSSVIQESLERLNKALKDLK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1C7N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -226041 for 3263 contacts (-69.3/contact) +
2D Compatibility (PS) -41568 + (NN) -17140 + (LL) 444
1D Compatibility (HY) -30000 + (ID) 4950
Total energy: -319255.0 ( -97.84 by residue)
QMean score : 0.504
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