Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------MEPKRSRLVVCAPEPSHAREFPDVAVFSGGRANA------SQAERLARAVGRVLADRGVTG-------------GARVRLTMANCADGPTLVQINLQV-GDTPLRAQAATAGIDDLRPALIRLD---RQIVRASAQWCPRPWPDR-------PRRRLTTPAEALV-------TRRKPVVLRRATP-LQAIAAMDAMDYDVH----------LFTDAETGEDA----VVYRAGPSGLRLARQHHV----FPPGWSRCRAPAG--------PPVPLIVNSRPTPVLTEAAAV---------DRAREHGLPFLF-----------FTDQATGRGQLLYSRYDGNLGLITPTGDG--------VADGLA-- |
| 4YLA Chain:A ((2-375)) | AGDPFVDNGTVSSQRPLRAVPGRYPPGA-THLDAAVDTLVRCHAALGRAPSEAEAAVCLLRRLWGRWGNTPVERPGWRSYVAVDGSPFELSAAWNGDGPAEVRVTVEATADPPTPEGNQEAGWEYLRGLSRHPGAATARVLALEDLFRPQTPHDRCWIMHGMASRPGADPLFKVYLDPDARGAAEAPSVLDEAMDRLGVRAAWQGLRGWLDEHGGSGRIGSLALDLADTDDARVKVYVQHAGLDWADIDRQAAVARGHVPGAFSAALEEITGTEVPPHKPPVTCFAFHRGVGVPTAATLYIPMPAGVPESDARRRSAAFMRRSGLDSAAYLAFLAAATGDGE--GVRALQNFVAYRPAAPGGRPRFACYVAPGLYRL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4YLA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -59082 for 1797 contacts (-32.9/contact) +
2D Compatibility (PS) -29450 + (NN) -13027 + (LL) 452
1D Compatibility (HY) -4000 + (ID) 3750
Total energy: -108857.0 ( -60.58 by residue)
QMean score : 0.233
|
|
|