Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVTVGVICAIPQELAYLRGVLVDAKRQQVAQILFDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIADRVVQHDFGLLTDERLRPYQPGHIPFIEPTERLGYPVDPAVIDRVKHRLDGFTLAPLSTAAGGGGRQPRIYYGTILTGDQYLHCERTRNRLHHEL-GGMAVEMEGGAVAQICASFDIPWLVIRALSDLAGADSGVDFNRFVGEVAASSARVLLRLLPVLTAC
4F1W Chain:A ((17-247))
--MKIGIIGAMEEEVTLLRDKIDNRQTITLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDETRYHDADVTAFG----YEYGQLPGCPA----GFKADDKLIAAAESCIR--------------ELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPDAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSTLMVETLVQKLAH-
General information:
TITO was launched using:
RESULT:
Template:
4F1W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -225051 for 2003 contacts (-112.4/contact) +
2D Compatibility (PS) -24465 + (NN) -5555 + (LL) 1240
1D Compatibility (HY) -18000 + (ID) 3450
Total energy: -275281.0 ( -137.43 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_4F1W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F1W-query.scw
PDB file :
Tito_Scwrl_4F1W.pdb
: