Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRSDTLATKLPWSDWLSRQRWYAGRNRELATVKPGVVVALRHNLDLVLVDVTYTDGATERYQVLVGWDFEPASEYGTKAAIGVADDRTGFDALYDVAGPQFLLSLIVSSAVCGTSTGEVTFTREPDVELPFAAQPRVCDAEQSNTSVIFD---RRAILKVFRRVS-SG----INPDIELNRVLTRAGNPHVARLLGAYQFGRPNRSPTDALAYALGMVTEYEANAAEGWAMATASVRDLFAEGDLYAHEVGGDFAGESYRLGEAVASVHATLADSLGTAQA---TFPV---DRMLARLSSTVA----VVPELREYAPTIE-------QQFQKLAAEAITVQRVHGDLHLGQVLRTP---ESWLLIDFEGEPGQPLDERRAPDSPLRDVAGVLRSFEYAAYGPLVDQATDKQLAARAREWVERNRAAFCDGYAVASGIDPRDSALLLGAYELDKAVYETGYETRHRPGWLPIPLRSIARLTAS |
| 4OCV Chain:A ((42-299)) | -------------------------------------------------------------------------------------------------------------------------------------DSIEPYGDGHINTTYLVTTDGPRYILQRMNTGIFPDTVNLMRNVELVTSTLKAQGKE-TLDIVRTTSGDTWA-----EIDGGAWRVYKFIEHTMSYN---------------------LVPNPDVFREAGRAFGDFQNFLSGFDANQLTETIAHFHDTPHRFEDFKKALAADELGRAAGCGPEIEFYLSHADQYAVVMDGLRDGSIPLRVTHNDTKLNNILMDATTGKARAIIDLDT---------IMPGSMLFDFGDSIRFGASTALE--------DERDLDKVHFSTELFRAYTEGFVGE------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -30396 for 1594 contacts (-19.1/contact) +
2D Compatibility (PS) -23538 + (NN) 607 + (LL) 13788
1D Compatibility (HY) -1200 + (ID) 1450
Total energy: -42189.0 ( -26.47 by residue)
QMean score : 0.292
|
|
|