Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTFESVADLAAAAGEKVGQSDWVTITQEEVNLFADATGDHQWIHVDPERAAAGPFGTTIAHGFMTLALLPRLQHQMYTVKGVKLAINYGLNKVRFPAPVPVGSRVRATSSLVGVEDLGN--GTVQATVSTTVEVEGSAKPACVAESIVRYVA
4FFU Chain:A ((27-168))
--QTIYYEDYE--QGHVRL-TSGRTITETDFVVHAGHTGDFFPHHMDAEFAKTLPGGQRIAHGTMIFSIGVGLTASL--I-N-PVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRG-EVVLAADHILIVE-
General information:
TITO was launched using:
RESULT:
Template:
4FFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61478 for 993 contacts (-61.9/contact) +
2D Compatibility (PS) -15409 + (NN) -5817 + (LL) 1404
1D Compatibility (HY) -4000 + (ID) 1800
Total energy: -87100.0 ( -87.71 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_4FFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FFU-query.scw
PDB file :
Tito_Scwrl_4FFU.pdb
: