Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDAA---------------DAQAVVTNYHVGGI-LIGSDTDLTIFDGALAEIVAGGGP-LPLAVSVDEEGGRVSRLRSLIGGTGPSARELAQTRTVQQVRDLARDRGRQMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYA-QGLRDAGVLPVLKHFPGHGRGSGDSHNG-GVTTPPLDDLVGDDLVPYRTLVTQAPVGVMVGHLQVPG---------LTGSE---PASLSKAAVN-LLRTGTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALW---VTT----KEVPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
3LK6 Chain:C ((16-367)) | ----------------------------------------------------------MSLDEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASLVKKYQFGGIILFAENVKTTKQTVQLTDDYQKASPKIPLMLSIDQEGGIVTRLGE--GTNFPGNMALGAARSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSN-RELTSRLGLYTMKGLQRQDIASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMG-----FNGVIVTNALN-MKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLK-------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3LK6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -134961 for 2754 contacts (-49.0/contact) +
2D Compatibility (PS) -34219 + (NN) -19756 + (LL) 2184
1D Compatibility (HY) -22800 + (ID) 5700
Total energy: -215252.0 ( -78.16 by residue)
QMean score : 0.416
|
|
|