Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDQRWLIDKSALVRLTDSPDMEIWSNRI-E-RGLVHITGVTRLEVGFSAEC-GEI-ARREFREPPLSAMPVEYLTPRIEDRALEVQTLLADRGHHRGPSIPDLLIAATAELSGLTVLHVD-KDFDAIAALTGQKTERLTHRPPSA
1V96 Chain:A ((2-135))
PLPPDITFDSLALIKM--HSQNMKRILEVTLAKFTVNLSIVTVYRYLTAR--LKKNIEAEFEI-LKD-IYNIVPLLDDIAIKAAQIEANLIKKE--ITLDMEDIITATTAIYTNSLLVTDDPKRYEPIRR-FGLDTMPLDK-----
General information:
TITO was launched using:
RESULT:
Template:
1V96.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28724 for 922 contacts (-31.2/contact) +
2D Compatibility (PS) -13617 + (NN) -1728 + (LL) 412
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -48657.0 ( -52.77 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_1V96.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V96-query.scw
PDB file :
Tito_Scwrl_1V96.pdb
: