Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPR--YADIGGGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLVRGGTYLDPEAAAAGAAAVAGQGRG
5PGM Chain:G ((2-234))
-----KLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKP-SKPSYYLDPEAAA------------
General information:
TITO was launched using:
RESULT:
Template:
5PGM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101034 for 1931 contacts (-52.3/contact) +
2D Compatibility (PS) -25188 + (NN) -16753 + (LL) 772
1D Compatibility (HY) -20800 + (ID) 7350
Total energy: -170353.0 ( -88.22 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_5PGM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5PGM-query.scw
PDB file :
Tito_Scwrl_5PGM.pdb
: