Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPKKKVAGLIKLQIVAGQANPAPPVGPALGQHGVNIMEFCKAYNAATENQRGNVIPVEITVYEDRSFTFTLKTPPAAKLLLKAAGVAKGSAEPHKTKVAKVTWDQVREIAETKKTDLNANDVDAAAKIIAGTARSMGITVE
3CJT Chain:J ((2-138))
----KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGR-------EIAKQKMP------LEAAARMIAGSARSMGVEV-
General information:
TITO was launched using:
RESULT:
Template:
3CJT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68695 for 804 contacts (-85.4/contact) +
2D Compatibility (PS) -13792 + (NN) -7652 + (LL) 1124
1D Compatibility (HY) -10800 + (ID) 3850
Total energy: -103665.0 ( -128.94 by residue)
QMean score : 0.734
(partial model without unconserved sides chains):
PDB file :
Tito_3CJT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CJT-query.scw
PDB file :
Tito_Scwrl_3CJT.pdb
: