Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD
5CYV Chain:A ((22-107))
------------------VLGAVNKALVPTGLRVRSYSVLVLACEQAEG-VNQRGVAATMGLDPSQIVGLVDELEERGLVVRTL-----RNKLIAATEEGRRLRD------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
5CYV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40879 for 578 contacts (-70.7/contact) +
2D Compatibility (PS) -8495 + (NN) -2233 + (LL) 5424
1D Compatibility (HY) -1600 + (ID) 400
Total energy: -48183.0 ( -83.36 by residue)
QMean score : 0.267
(partial model without unconserved sides chains):
PDB file :
Tito_5CYV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CYV-query.scw
PDB file :
Tito_Scwrl_5CYV.pdb
: