Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEIARLAPLAIQHAKRVLNDDGAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQGA
5DU8 Chain:C ((21-263))
MIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEIARLAPLAIQHAKRVLNDDGAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQGA
General information:
TITO was launched using:
RESULT:
Template:
5DU8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143938 for 1994 contacts (-72.2/contact) +
2D Compatibility (PS) -27042 + (NN) -14952 + (LL) 0
1D Compatibility (HY) -29200 + (ID) 12150
Total energy: -227282.0 ( -113.98 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_5DU8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DU8-query.scw
PDB file :
Tito_Scwrl_5DU8.pdb
: