Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSACLRDARERYQVPVVEVILPAVRRAVAATRNGRIGVIGTRATITSHAYQDAF-AAARDTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGDPEAFTKLAARFLGPVLGGVQPVHPSRIH
2JFP Chain:B ((27-286))
-------IGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVTKNNKIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTPEAPTQPHEFYTTGSAKMFEEIASSWLGIENLKAQQIH-----
General information:
TITO was launched using:
RESULT:
Template:
2JFP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -251628 for 2388 contacts (-105.4/contact) +
2D Compatibility (PS) -28667 + (NN) -13778 + (LL) 320
1D Compatibility (HY) -22800 + (ID) 5300
Total energy: -321853.0 ( -134.78 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_2JFP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFP-query.scw
PDB file :
Tito_Scwrl_2JFP.pdb
: