Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLLSRLRKREPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSGESTTAPV
2GKM Chain:B ((2-127))
-GLLSRLRKREPISIYDKIGGHEAIEVVVEDFFVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVT---------
General information:
TITO was launched using:
RESULT:
Template:
2GKM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93602 for 862 contacts (-108.6/contact) +
2D Compatibility (PS) -13694 + (NN) -7580 + (LL) 384
1D Compatibility (HY) -17600 + (ID) 6250
Total energy: -138342.0 ( -160.49 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_2GKM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GKM-query.scw
PDB file :
Tito_Scwrl_2GKM.pdb
: