Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDRIVMEVSRYRPEIESAPTFQAYEVPLTREWAVLDGLTYIKDHLDGTLSFRWSCRMGICGSSGMTINGDPKLACATFLADYLPGPVRVEPMRNFPVIRDLVVDISDFMAKLPSVKPWLVRHDEPPVEDGEYRQTPAELDAFKQFSMCINCMLCYSACPVYALDPDFLGPAAIALGQRYNLDSRDQGAADRRDVLAAADGAWACTLVGECSTACPKGVDPAGAIQRYKLTAATHALKKLLFPWGGG
3P4P Chain:N ((3-242))
-MKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDG-MKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRT-ADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFLIATLKP----
General information:
TITO was launched using:
RESULT:
Template:
3P4P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122154 for 1919 contacts (-63.7/contact) +
2D Compatibility (PS) -24590 + (NN) -9335 + (LL) -432
1D Compatibility (HY) -23600 + (ID) 6050
Total energy: -186161.0 ( -97.01 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_3P4P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P4P-query.scw
PDB file :
Tito_Scwrl_3P4P.pdb
: