Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARVKRAVNAHKKRRSILKASRGYRGQRSRLYRKAKEQQLHSLNYAYRDRRARKGEFRKLWIARINAAARLNDITYNRLIQGLKAAGVEVDRKNLADIAISDPAAFTALVDVARAALPEDVNAPSGEAA
2GHJ Chain:A ((18-117))
-------------------LAKGYRGQRSRSYRRAKEAVMRALYYQYRDRKLRKREFRRLWIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEALQV----------
General information:
TITO was launched using:
RESULT:
Template:
2GHJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18707 for 569 contacts (-32.9/contact) +
2D Compatibility (PS) -11364 + (NN) -6542 + (LL) 2228
1D Compatibility (HY) -8800 + (ID) 2800
Total energy: -45985.0 ( -80.82 by residue)
QMean score : 0.777
(partial model without unconserved sides chains):
PDB file :
Tito_2GHJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GHJ-query.scw
PDB file :
Tito_Scwrl_2GHJ.pdb
: