Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMVNTTTRLSDDALAFLSERHLAMLTTLRADNSPHVVAVGFTFDP---KTHIARVITTGG--S------QKAVNADRSGLAVLSQVDG------ARWLSLEGRAAVNSDIDAVRDAELRYAQRYRTPR-PNPRRVVIEVQIERVLGSADLLDRA
4ZKY Chain:A ((5-143))
-----------FDAVTAFADAPAAVLSTLNADGAPHLVPVVFAVHVPHVEGQPARIYTAVDAKRKTTRNLRRLANIDRDSRVSLLVDHYSDDWTQLWWVRADGVATTHHSGDEVATGYALLRAKYHQYERVSLDGPVISVEVSRWASWQA-----
General information:
TITO was launched using:
RESULT:
Template:
4ZKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43514 for 863 contacts (-50.4/contact) +
2D Compatibility (PS) -13666 + (NN) -9749 + (LL) 1596
1D Compatibility (HY) -4000 + (ID) 1500
Total energy: -70833.0 ( -82.08 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_4ZKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZKY-query.scw
PDB file :
Tito_Scwrl_4ZKY.pdb
: