Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLG--VPVSKVAQQLREGHL--VAVRRAGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAREVVRRAQAMAY
1PM6 Chain:A ((2-51))
----------------------------YLTLQEWNARQRRPRSLETVRRWVRESRIFPPPVKDGREYLFHESAVKVD------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33659 for 250 contacts (-134.6/contact) +
2D Compatibility (PS) -5207 + (NN) -2038 + (LL) 4980
1D Compatibility (HY) -2400 + (ID) 250
Total energy: -38574.0 ( -154.30 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_1PM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PM6-query.scw
PDB file :
Tito_Scwrl_1PM6.pdb
: