Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIADEIQSGLACTGYPFACDHGGVLPDIYLLGKTLGGGAVPLSAMVADREIFGVVHPGEHGSTFGGNPLAAAIGTPVVSMVVWGECQARSAKLGAHLHQRL-ADLIGDGA--VALRGLGWWADVDIERALAIGTDMSMRLADRGVLLKDTYGAALRFAPPLVITAQEIDCAVRRFADALWEAGS
5EAV Chain:B ((254-432))
LIVDEIQTGLCRTGRLLAADHDEVHPDILLLGKSLSAGVVPISAVMGRADVMDVLKPGTHGSTFGGNPLACAVAVEALTVLKDEKLADRAERLGAQFRDCLRRELYGKVPWIKEIRGRGLLNAVEVDSDAIDPNDVVMKLKENGILSKPTRGRVMRFIPPLVITDEEHRDATTRIIKSF-----
General information:
TITO was launched using:
RESULT:
Template:
5EAV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107837 for 1216 contacts (-88.7/contact) +
2D Compatibility (PS) -18727 + (NN) -5780 + (LL) 204
1D Compatibility (HY) -12800 + (ID) 3550
Total energy: -148490.0 ( -122.11 by residue)
QMean score : 0.236
(partial model without unconserved sides chains):
PDB file :
Tito_5EAV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5EAV-query.scw
PDB file :
Tito_Scwrl_5EAV.pdb
: