Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRARVLRRWSVPPVRPPVTVVQALP-KSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT-ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVLTSRWDASASDCEYCDVTRR
2EGV Chain:A ((3-229))
----VFYSEER--RGNLLILREGEVKHF-RVRRIEKDEEFGVIH-EGKIYVCKVRREDKREISCEIVEELETKLPPKDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEE--AILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRLSDLIPESE------E-NIILDNFYEGVKPKDV-NLEAKTYSVVVGPEGGFSKRESQILREKGFKSVLLEPYTLRTETAVVSIVSILMNF-------------------
General information:
TITO was launched using:
RESULT:
Template:
2EGV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166014 for 1782 contacts (-93.2/contact) +
2D Compatibility (PS) -23736 + (NN) -1653 + (LL) 2320
1D Compatibility (HY) -9600 + (ID) 2550
Total energy: -201233.0 ( -112.93 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_2EGV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EGV-query.scw
PDB file :
Tito_Scwrl_2EGV.pdb
: