Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGGTFDPIHYGHLVAASEVADLFDLDEVVFVPSGQPWQKGRQVSAAEHRYLMTVIATASNPRFSVSRVDIDRGGPTYTKDTLADLHALHPDSELYFTTGADALASIMSWQGWEELFELARFVGVSRPGYELRNEHITSLLGQLAKDALTLVEIPALAISSTDCRQRAEQSRPLWYLMPDGVVQYVSKCRLYCGACDAGARSTTSLAAGNGL
4YBR Chain:B ((10-201))
MGGTFDPIHYGHLVAASEVADLFDLDEVVFVPSGQPW--GRQVSAAEHRYLMTVIATASNPRFSVSRVDIDRGGPTYTKDTLADLHALHPDSELYFTTGADALASIMS---WEELFELARFVGVSRPGYELRNEHITSLLGQLAKDALTLVEIPALAISSTDCRQRAEQSRPLWYLMPDGVVQYVSKRRLYT-------------------
General information:
TITO was launched using:
RESULT:
Template:
4YBR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143055 for 1466 contacts (-97.6/contact) +
2D Compatibility (PS) -20546 + (NN) -11745 + (LL) 720
1D Compatibility (HY) -25600 + (ID) 9250
Total energy: -209476.0 ( -142.89 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_4YBR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YBR-query.scw
PDB file :
Tito_Scwrl_4YBR.pdb
: