Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGIVGVGIDLVSIPDFAEQVDQPGTVFAETFTPGERRDASDKSSSAA---RHLAARWAAKEAVIKAWSGSRFAQRPVLPEDI--HRDIEVVTDMWGRPRVRLTGAIA----EYLADVTIHVSLTHEGDTAAAVAILEAP
3NFD Chain:D ((10-149))
-----VGVDLVHIPGFAEQLSRPGSTFEQVFSPLERRHAQTR-----SRTEHLAGRWAAKEAFIKAWSQAIYGKPPVIEPDLVNFAEIEVLPDRWGRVALQLKGEVAAKLQESIGDVELALSISHDGDYATALCLL---
General information:
TITO was launched using:
RESULT:
Template:
3NFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52408 for 795 contacts (-65.9/contact) +
2D Compatibility (PS) -12492 + (NN) -2711 + (LL) 572
1D Compatibility (HY) -12000 + (ID) 2900
Total energy: -81939.0 ( -103.07 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_3NFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NFD-query.scw
PDB file :
Tito_Scwrl_3NFD.pdb
: