Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGHGSSGGHASL
1SM8 Chain:B ((21-156))
MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLA------------------
General information:
TITO was launched using:
RESULT:
Template:
1SM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87754 for 910 contacts (-96.4/contact) +
2D Compatibility (PS) -14929 + (NN) -5923 + (LL) -688
1D Compatibility (HY) -19600 + (ID) 6800
Total energy: -135694.0 ( -149.11 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_1SM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM8-query.scw
PDB file :
Tito_Scwrl_1SM8.pdb
: