Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLEV
4GFQ Chain:A ((26-209))
-GQQVLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV
General information:
TITO was launched using:
RESULT:
Template:
4GFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50452 for 1304 contacts (-38.7/contact) +
2D Compatibility (PS) -20447 + (NN) -11676 + (LL) 208
1D Compatibility (HY) -16400 + (ID) 4550
Total energy: -103317.0 ( -79.23 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_4GFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GFQ-query.scw
PDB file :
Tito_Scwrl_4GFQ.pdb
: