Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGRIE-VDEPYVLILPTYGGGRANPGLDAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDDVAAVRTGLAEFWKEQTCHQPSLQSL
2XOD Chain:A ((1-118))
------MLVAYDSMTGNVKRFIHKLNMPAVQIG--EDLVIDED-FILITYTTGFGN----------VPERVLEFLERNN--EKLKGVSASGNRNWGDMFGASADKISAKYEVPIVSKFELSGTNNDVEYFKERVREIAT------------
General information:
TITO was launched using:
RESULT:
Template:
2XOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111312 for 924 contacts (-120.5/contact) +
2D Compatibility (PS) -12402 + (NN) -4895 + (LL) 1024
1D Compatibility (HY) -9200 + (ID) 2150
Total energy: -138935.0 ( -150.36 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_2XOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XOD-query.scw
PDB file :
Tito_Scwrl_2XOD.pdb
: