Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVHVVDHPLAAARLTTLRDERTDNAGFRAALRELTLLLIYEATRDAPCEPVPIR-----TPLAETVGSRLTKPPLLVPVLRAGLGMVDEAHAALPEAHVGFVGVARDEQTHQPVPYLDSLPDDLTDVPVMVLDPMVATGGSMTHTLGLLISRGAADITVLCVVAAPEGIAALQKAAPNVRLFTAAIDEGLNEVAYIVPGLGDAGDRQFGPR
2EHJ Chain:D ((6-208))
-----VKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGPVEIDQIKGKKIT----VVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK
General information:
TITO was launched using:
RESULT:
Template:
2EHJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159271 for 1612 contacts (-98.8/contact) +
2D Compatibility (PS) -21289 + (NN) -4667 + (LL) 716
1D Compatibility (HY) -19200 + (ID) 4650
Total energy: -208361.0 ( -129.26 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_2EHJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EHJ-query.scw
PDB file :
Tito_Scwrl_2EHJ.pdb
: