Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAFGLDDLPRERR
4F3W Chain:B ((6-126))
-PDIDWKQLRDKATQVAAGAYAPYSRFPVGAAALVDDGRVVTGCNVENVSYGLALCAECGVVCALHATGGGRLVALACVDGRGAPLMPCGRCRQLLFEHGGPELLVDHLAGPRRLGDLLPEP-----------
General information:
TITO was launched using:
RESULT:
Template:
4F3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91354 for 978 contacts (-93.4/contact) +
2D Compatibility (PS) -13316 + (NN) -8895 + (LL) 632
1D Compatibility (HY) -14800 + (ID) 4850
Total energy: -132583.0 ( -135.57 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_4F3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F3W-query.scw
PDB file :
Tito_Scwrl_4F3W.pdb
: