Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDY-QQAALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYK-KRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGND-------AAESVAQFSISWNETHGKPPTR-REIIEGYYGEYVDKADMFI-----GFGR-FSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQL-NVLRNRYRAQPDRVFGVGCVHDGIWFAEG
3WQL Chain:A ((2-294))
-NLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQ-AALRQSIRILKMLFEHGIETVISPIFS---------IVQALEGMALLANDEE-ILSFYKEHEVHVLFYGDYKKRL-PSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNET-------HGKPPTRREIIEGYY-GEYVDKADMFIGFGRFSTFDFPLLS------SGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNR-YRAQPDRVFGVGCVHDGIWFA--
General information:
TITO was launched using:
RESULT:
Template:
3WQL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137034 for 1827 contacts (-75.0/contact) +
2D Compatibility (PS) -29626 + (NN) -22084 + (LL) 1428
1D Compatibility (HY) -32800 + (ID) 11250
Total energy: -231366.0 ( -126.64 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_3WQL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WQL-query.scw
PDB file :
Tito_Scwrl_3WQL.pdb
: