Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN
4POB Chain:B ((13-117))
-------ATVTVTDDSFQEDVVSSNKPVLVDFWATWCGPCKMVAPVLEEIAKDHGEALTIAKLDVDANPETARAFQVTSIPTLILFQNGEATKRIVGAKSKSALLRELDGVV----
General information:
TITO was launched using:
RESULT:
Template:
4POB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74834 for 785 contacts (-95.3/contact) +
2D Compatibility (PS) -11297 + (NN) -2416 + (LL) 172
1D Compatibility (HY) -13600 + (ID) 4000
Total energy: -105975.0 ( -135.00 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_4POB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4POB-query.scw
PDB file :
Tito_Scwrl_4POB.pdb
: