Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERAAEHLQRCVEQDPKYSAGWKLLGKARQAAGDLAGARQAWEQGLATAATHGDKQAEKEMTVFLRKLDRART
3KD7 Chain:B ((29-104))
--IEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD------------------------
General information:
TITO was launched using:
RESULT:
Template:
3KD7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11819 for 554 contacts (-21.3/contact) +
2D Compatibility (PS) -8689 + (NN) -7431 + (LL) 2472
1D Compatibility (HY) -2000 + (ID) 1200
Total energy: -28667.0 ( -51.75 by residue)
QMean score : 0.675
(partial model without unconserved sides chains):
PDB file :
Tito_3KD7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KD7-query.scw
PDB file :
Tito_Scwrl_3KD7.pdb
: