Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISSFRAQCAARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAANIHQLDFLLEDLPDVWLDRLAGTWPGPNTWLVPHQERLPEWVTGVHDSVAVRVTDHPLVQELCHLTG-PLISTSANPAGRPAARTRLRVEQYFHDELDAILG-GALGGRRNPSLIRDLVTG--QVIRPA
3VTH Chain:A ((203-384))
----DEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRY-GKPFAVMMRDVEEVKKYCIVS-PEEERLLL-SQRRPIVLLKKKGEKLAKGIADDLDTLGVMLPYAPIHYLLMEEIDFPIVMTSGNVSEEPICKDNEEALEKLKDIADVFLLNNRDIVNRIDDSVTSFNAGAERIIRRA
General information:
TITO was launched using:
RESULT:
Template:
3VTH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101567 for 1391 contacts (-73.0/contact) +
2D Compatibility (PS) -19795 + (NN) -12726 + (LL) 236
1D Compatibility (HY) -5200 + (ID) 1750
Total energy: -140802.0 ( -101.22 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_3VTH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VTH-query.scw
PDB file :
Tito_Scwrl_3VTH.pdb
: