Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNHCFANGNKRTAAAAATVFLLLNGIELTGPAQDFVDIMVALVTREASVQDLEDWMFYWHRPFDAYNLPDSDAFERMVARLGIG
2HCM Chain:A ((98-128))
------NGRSRSAAVCTAYLMRHRGHSL----DRAFQMVKSARPVAEPNLGFWAQLQKYEQTLQAQAILPRE------------
General information:
TITO was launched using:
RESULT:
Template:
2HCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19553 for 159 contacts (-123.0/contact) +
2D Compatibility (PS) -3392 + (NN) -1176 + (LL) 1644
1D Compatibility (HY) -800 + (ID) 350
Total energy: -23627.0 ( -148.60 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_2HCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HCM-query.scw
PDB file :
Tito_Scwrl_2HCM.pdb
: